BIOCHEMISTRY
PART I: Introduction to Chemistry
Description of Matter:
The Atom. Isotopes and Atomic Masses. Introduction to the Periodic Table. Atomic Orbitals and Their Energies. Chemical Bonding: An Overview of Chemical Bonding. Ionic Bonding. Lewis Electron Dot Symbols. Lewis Structures and Covalent Bonding. Properties of Covalent Bonds, Polar Covalent Bonds. Ionic and hydrogen bonds.
Energy Changes in Chemical Reactions and Chemical Thermodynamics:
Thermodynamics and Work. The First and The Second Law of Thermodynamics. Enthalpy and Entropy Free Energy. Spontaneity and Equilibrium. Thermodynamics and Life.
Enzymes: classification, kinetics, and control
Molecules, Ions and Chemical Formulas:
Chemical Compounds. Acids and Bases and Ionic Compounds. The Chemical Equilibrium: Concept of Chemical Equilibrium. The Equilibrium Constant. Factors That Affect Equilibrium. Solution Concentrations. Acid–Base Reactions. A Qualitative Description of Acid–Base Equilibriums. Molecular Structure and Acid–Base Strength. Acid–Base Reaction.
Reactions in Aqueous Solution:
Aqueous Solutions. The Autoionization of Water. Solubility and pH.
Elements of Organic Chemistry:
General Overview of Carbon Compounds. Alkanes, Alkenes, Alkynes, Benzene. Overview of Functional Groups: Alcohols, Ethers and Phenols. Aldehydes and Ketones. Amines and Heterocycles.
PART II: STRUCTURE AND FUNCTION OF BIOMOLECULES
- Carbohydrate: General aspects and classification. Monosaccharides, Disaccharides and Polysaccharides.
- Lipids: General aspects and classification. Fatty Acids, Triglycerides, Phospholipids, Sterols and Cholesterol.
- Proteins: Amino Acids, Peptides, and Proteins. Covalent structures and three-dimensional structures of proteins. Protein Folding and Dynamics. Hemoglobin and Mioblobin. Protein Function
Pathological Hemoglobin.
Nucleic Acids: structure, fuction and general aspects. Nucleotides and Nucleosides
PART III: METABOLISM
Introduction to Metabolism:
- Carbohydrate metabolism I: major metabolic pathways and their control. Glycolysis. Citric Acid Cycle. Electron Transport and Oxidative Phosphorylation. Carbohydrate metabolism II: special pathways and glycoconjugates. Glycogen Metabolism, Gluconeogenesis and the Pentose Phosphate Pathway.
- Lipid Metabolism: utilization and storage of energy in lipid form. Pathways of metabolism of special lipids: β-oxidation and ketogenesis.
- Protein Metabolism: Amino acid metabolism and Urea cycle.
PHYSIOLOGY
1. Introduction to Physiology (3 hours).
1.1 Definition of Physiology and its areas of interest; concept of internal and external environment for the cell and for the organism; concept of homeostasis.
1.2 General characteristics of plasma membranes; fluid mosaic model; integral and associated membrane proteins; receptors and transport proteins; difference between carriers and channels.
1.3 The movement of substances through membranes and epithelia; concept of simple or mediated diffusion through membranes; active transport; concept of symport and antiport: the examples of Na+/K+ pump and of the Na + -glucose symport.
2. Neuron physiology and generation of electrical signals (4 hours)
2.1 Distribution of solutes in the different liquid compartments of the organism (schematic drawing); resting membrane potential; equilibrium potentials of Na+ and K+.
2.2 Introduction to the nervous system: basic structure of the neuron (schematic drawing of its different parts); glial cells; myelin sheath; axonal transport.
2.3 Resting membrane potential of neurons; changes in membrane potential and generation of signals; concept of depolarization and hyperpolarization; the generation of graduated potentials (graph); concept of subthreshold and suprathreshold potential (graph); spatial and temporal summation of graduated potentials; action potential (graph); absolute and relative refractory periods (graph); saltatory conduction.
2.4 Communication between neurons: chemical synapses (schematic drawing of its different parts) and electrical synapses; mechanisms of release and inactivation of neurotransmitters in chemical synapses; neuromuscular junction (schematic drawing of its different parts).
3. Skeletal and Smooth muscle: structure and function (6 hours).
3.1 The three types of muscle in our body: skeletal, cardiac and smooth; general skeletal muscle fiber structure: myofibrils, sarcomers, and membrane systems.
3.2 Coupling-excitation contraction in striated muscles: transverse tubules and sarcoplasmic reticulum; voltage sensor (DHPR); sarcoplasmic reticulum Ca2+ release channel (Ryr); triads or calcium release units (schematic drawing of its different parts)
3.3 The sarcomer (schematic design of the organization of filaments, lines, and bands); the main proteins of the sarcomer: contractile, regulatory and accessory; role of troponin and tropomyosin in the activation of contraction; cycle of the head of myosin.
3.4 Classification of muscle fibres according to metabolism and contraction rate; classification into red and white fibres; structural and functional differences between slow, intermediate and fast fibres; concept of motor unit and recruitment; relationship between electrical events and mechanical events; simple shock (graph), summation (graph), incomplete and complete tetanus (graphs); definition of fatigue (graph).
3.5 General characteristics of smooth muscle cells; organisation of thick and thin myofibres in smooth cells; molecular mechanisms of contraction; mechanisms of contraction: role of calmodulin and phosphorylation of the light chain of myosin.
4. Physiology of the Cardiovascular System (5 hours).
4.1 Introduction to the cardiovascular system: anatomy and general functions.
4.2 The heart (schematic drawing): pacemaker and contractile tissues; contractile myocardial cells and intercalated disks (schematic drawing); the conduction system (schematic drawing of its various components); the action potential of pacemaker cells (graph); the action potential of contractile cells (graph); the electrocardiogram (graph); the cardiac cycle explained with the 5 phases; the cardiac cycle explained with the pressure-volume curve of the left ventricle (graph); cardiac output (formula); modulation of heart rate by the autonomic nervous system.
4.3 Large and small circulation; arterial pressure and its measurement (concept of systolic and diastolic pressure); mean arterial pressure and factors affecting it; structure of blood vessels: differences between arteries and veins; the role of arteries and veins in helping the heart to pump blood; regulation of arterial pressure and baroceptor reflex (schematic drawing of its functioning).
5. Physiology of the Respiratory System (4 hours).
5.1 Introduction to the respiratory system: anatomy and general functions; the reasons for an internalized respiratory system; upper and lower airways; structure of the lung and alveoli; the pleurae and their role in ventilation; inspiratory and expiratory muscles; concepts of lung compliance and elasticity; the four phases of external respiration.
5.2 Ventilation (inhalation and exhalation) gas exchange between alveoli and blood; the laws of gases; muscles involved in ventilation at rest and under stress; ventilation mechanics; spirometry and measurement of pulmonary volumes and capacities (graph); concept of pulmonary and alveolar ventilation (formulas); and air exchange between external space and lungs.
5.3 Transport of gasses in the blood and gas exchange blood-tissues; transport of O2; hemoglobin/ O2 dissociation curve (graph); blood transport of CO2 and its effect on blood pH.
6. Physiology of the kidney (6 hours).
6.1 Introduction to the urinary system: urinary tract and kidney; main functions of the kidneys; cortex and medullary; nephron: tubular elements and vascular elements (schematic drawing of its different parts); structure of the renal corpuscle (schematic drawing).
6.2 The nephron: the four fundamental processes (filtration, resorption, secretion, excretion); filtration fraction; filtration pressure; autoregulation of glomerular filtration rate (graph): myogenic response and tubular-glomerular feedback; resorption (e.g.: sodium, glucose, urea).
6.3 The hydro-electrolytic balance: water balance and role of the kidney in its regulation; vasopressin or antidiuretic hormone; counter-current exchange in the medullary of the kidney (schematic drawing of its functioning); sodium and potassium balance and renin-angiotensin-aldosterone via; behavioural mechanisms in the hydro-electrolytic balance: thirst, appetite for salt, behaviour of avoiding heat.
Insights (2 hours)
a. Reflex control of blood pressure and ventilation (1 hour): aortic and carotid baroreceptors; bulbar cardiovascular control center; autonomous efferent pathways: targets and effect of sympathetic and parasympathetic regulation; baroceptive reflex (schematic drawing of its operation); central and peripheral chemoceptors; bulbary control centres and ventilation bridges; efferent pathways to the ventilator muscles.
b. Blood; composition of plasma; corpusculated component: red blood cells, white blood cells and platelets; concept of hematocrit; hematopoiesis; hemostasis and coagulation.